Returns the default cache directory with a version number
Source:R/utils.R
get_default_cache_dir.RdReturns the default cache directory with a version number
References
Shen, M., Y. Gao, N. Liu, D. Bhuva, M. Milton, J. Henao, J. Andrews, E. Yang, C. Zhan, N. Liu, S. Si, J. W. Hutchison, M. H. Shakeel, M. Morgan, A. T. Papenfuss, J. Iskander, J. M. Polo, and S. Mangiola. "cellNexus: Quality control, annotation, aggregation and analytical layers for the Human Cell Atlas data." bioRxiv (2026). doi:10.64898/2026.04.14.718336.
Examples
get_metadata(cloud_metadata = SAMPLE_DATABASE_URL, cache_directory = get_default_cache_dir())
#> # A query: ?? x 36
#> # Database: DuckDB 1.5.4 [unknown@Linux 6.17.0-1020-azure:R 4.6.1/:memory:]
#> cell_id dataset_id sample_id sample_ experiment___ run_from_cell_id
#> <dbl> <chr> <chr> <chr> <chr> <chr>
#> 1 15 842c6f5d-4a94-4eef-… 1119f482… 1119f4… "" NA
#> 2 16 842c6f5d-4a94-4eef-… 1119f482… 1119f4… "" NA
#> 3 17 842c6f5d-4a94-4eef-… 1119f482… 1119f4… "" NA
#> 4 18 842c6f5d-4a94-4eef-… 1119f482… 1119f4… "" NA
#> 5 19 842c6f5d-4a94-4eef-… 1119f482… 1119f4… "" NA
#> 6 20 842c6f5d-4a94-4eef-… 1119f482… 1119f4… "" NA
#> 7 14 842c6f5d-4a94-4eef-… 1119f482… 1119f4… "" NA
#> 8 2 842c6f5d-4a94-4eef-… 1f755b9b… 1f755b… "" NA
#> 9 3 842c6f5d-4a94-4eef-… 1f755b9b… 1f755b… "" NA
#> 10 4 842c6f5d-4a94-4eef-… 1f755b9b… 1f755b… "" NA
#> # ℹ more rows
#> # ℹ 30 more variables: sample_heuristic <chr>, age_days <int>,
#> # tissue_groups <chr>, nFeature_expressed_in_sample <int>, nCount_RNA <dbl>,
#> # empty_droplet <lgl>, cell_type_unified_ensemble <chr>, is_immune <lgl>,
#> # subsets_Mito_percent <int>, subsets_Ribo_percent <int>,
#> # high_mitochondrion <lgl>, high_ribosome <lgl>, scDblFinder.class <chr>,
#> # sample_chunk <int>, cell_chunk <int>, sample_pseudobulk_chunk <int>, …